Bioinformatics : high performance parallel computer architectures

Bioinformatics high performance parallel computer architectures

Literaturangaben

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Bibliographische Detailangaben
Weitere Verfasser: Schmidt, Bertil (HerausgeberIn)
Format: UnknownFormat
Sprache:eng
Veröffentlicht: Boca Raton u.a. CRC, Taylor & Francis 2011
Schriftenreihe:Embedded multi-core systems
Schlagworte:
Bioinformatics > Data processing > Parallel processing (Electronic computers) > Aufsatzsammlung > Bioinformatik > Datenverarbeitung > Parallelverarbeitung
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Zusammenfassung:Literaturangaben
Algorithms for bioinformatics (Bertil Schmidt) -- Introduction to GPGPUs and massively-threaded programming (Rob Farber) -- FPGA: architecture and programming (Douglas Maskell) -- Parallel algorithms for alignments on the cell be (Abhinav Sarje, Srinivas Aluru) -- Orchestrating the phylogenetic likelihood function on emerging parallel architectures (Alexandros Stamatakis) -- Parallel bioinformatics algorithms for CUDA-enabled GPUs (Yongchao Liu, Bertil Schmidt, Douglas Maskell) -- CUDA error correction method for high-throughput short-read sequencing data (Haixiang Shi, Weiguo Liu, Bertil Schmidt) -- FPGA acceleration of seeded similarity search (Arpith Jacob, Joseph Lancaster, Jeremy Buhler, Roger Chamberlain) -- Seed-based parallel protein sequence comparison combining multithreading, GPU and FPGA technologies (Dominique Lavenier, Van-Hoa Nguyen) -- Database searching with profile hidden markov models on reconfigurable and many-core architectures (John Paul Walters, Vipin Chaudhary, Bertil Schmidt) -- Cobacobana: a massively parallel FPGA-based computer architecture (Manfred Schimmler, Lars Wienbrandt, Tim Gèuneysu, Jost Bissel) -- Accelerating string set matching for bioinformatics using FPGA hardware (Yoginder S. Dandass) -- Reconfigurable neural system and its application to dimeric protein binding site identification (Feng Lin, Maria Stepanova) -- Parallel FPGA search engine for protein identification (Daniel Coca, Istvan Bogdan, RoBert J. Beynong)
Beschreibung:Includes bibliographical references and index
Beschreibung:XIV, 356 S.
Ill., graph. Darst
ISBN:9781439814888
978-1-4398-1488-8