mRNA 3' end processing and metabolism
Application and design considerations for 3′-end sequencing using click-chemistry / Madeline K. Jensen, Nathan D. Elrod, Hari Krishna Yalamanchili, Ping Ji, Ai Lin, Zhandong Liu, and Eric J. Wagner -- PAS-seq 2 : A fast and sensitive method for global profiling of polyadenylated RNAs / Yoseop Yoon,...
Gespeichert in:
| Weitere Verfasser: | |
|---|---|
| Format: | UnknownFormat |
| Sprache: | eng |
| Veröffentlicht: |
Cambridge, MA, San Diego, CA, Oxford, London
Academic Press, an imprint of Elsevier
2021
|
| Ausgabe: | First edition |
| Schriftenreihe: | Methods in enzymology
volume 655 |
| Schlagworte: | |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
Tag hinzufügen | Zusammenfassung: | Application and design considerations for 3′-end sequencing using click-chemistry / Madeline K. Jensen, Nathan D. Elrod, Hari Krishna Yalamanchili, Ping Ji, Ai Lin, Zhandong Liu, and Eric J. Wagner -- PAS-seq 2 : A fast and sensitive method for global profiling of polyadenylated RNAs / Yoseop Yoon, Lindsey V. Soles, and Yongsheng Shi -- TRENDseq : A highly multiplexed high throughput RNA 3′ end sequencing for mapping alternative polyadenylation / Anton Ogorodnikov and Sven Danckwardt -- QPAT-seq, a rapid and deduplicatable method for quantification of poly(A) site usages / Juncheng Lin, Congting Ye, and Qingshun Q. Li -- Using TIF-Seq2 to investigate association between 5´ and 3´mRNA ends / Bingnan Li, Sueli Marques, Jingwen Wang, and Vicent Pelechano -- Single-molecule polyadenylated tail sequencing (SM-PAT-Seq) to measure polyA tail lengths transcriptome-wide / Steven L. Coon, Tianwei Li, James R. Iben, Sandy Mattijssen, and Richard J. Maraia -- 3′ end sequencing of pA⁺ and pA⁻ RNAs / Guifen Wu, Manfred Schmid, and Torben Heick Jensen -- Comprehensive profiling of mRNA polyadenylation in specific cell types in vivo by cTag-PAPERCLIP / R. Samuel Herron and Hun-Way Hwang -- A computational pipeline to infer alternative poly-adenylation from 3′ sequencing data / Hari Krishna Yalamanchili, Nathan D. Elrod, Madeline K. Jensen, Ping Ji, Ai Lin, Eric J. Wagner, and Zhandong Liu -- Systematic refinement of gene annotations by parsing mRNA 3′ end sequencing datasets / Pooja Bhat, Thomas R. Burkard, Veronika A. Herzog, Andrea Pauli, and Stefan L. Ameres -- Computational analysis of alternative polyadenylation from standard RNA-seq and single-cell RNA-seq data / Yipeng Gao and Wei Li -- Quantifying alternative polyadenylation in RNAseq data with LABRAT / Austin E. Gillen, Raeann Goering, and J. Matthew Taliaferro -- Poly(A) tail dynamics : Measuring polyadenylation, deadenylation and poly(A) tail length / Michael Robert Murphy, Ahmet Doymaz, and Frida Esther Kleiman -- Reconstitution and biochemical assays of an active human histone pre-mRNA 3′-end processing machinery / Yadong Sun, Wei Shen Aik, Xiao-Cui Yang, William F. Marzluff, Zbigniew Dominski, and Liang Tong -- Comprehensive RNP profiling in cells identifies U1 snRNP complexes with cleavage and polyadenylation factors active in telescripting / Zhiqiang Cai, Byung Ran So, and Gideon Dreyfuss -- Simultaneous studies of gene expression and alternative polyadenylation in primary human immune cells / Joana Wilton, Michael Tellier, Takayuki Nojima, Angela M. Costa, Maria Jose Oliveira, and Alexandra Moreira -- RIPiT-Seq : A tandem immunoprecipitation approach to reveal global binding landscape of multisubunit ribonucleoproteins / Zhongxia Yi and Guramrit Singh -- Generation of 3′UTR knockout cell lines by CRISPR/Cas9-mediated genome editing / Sibylle Mitschka, Mervin M. Fansler, and Christine Mayr -- Modulation of alternative cleavage and polyadenylation events by dCas9-mediated CRISPRpas / Jihae Shin, Ruijia Wang, and Bin Tian. |
|---|---|
| Beschreibung: | Includes bibliographical references |
| Beschreibung: | xx, 482 Seiten Illustrationen 24 cm |
| ISBN: | 9780128235737 978-0-12-823573-7 012823573X 0-12-823573-X |